User Guide   Tips & Tricks   Tutorial   Feedback   Art Gallery   References                                     home Last modified 31 March 98 by N.Guex

Index This index is provided with the sole purpose of pointing to a page where you can find more information about the subject. You might have to read a good part of the page to actually find the information, and I do apologise. In any case, the best way to learn how to use Swiss-PdbViewer is to take the time to do the tutorials.   A Adding Residues AMBER   B B-factor Backbone (colour) Backbone (angles) Building Loops Building Residues   C Changing the chain name for some aa Changing the size of the slab Changing Phi/Psi angles for an amino-acid CHARMm Clearing user labels (distances, angles...) Colours Comparing two proteins Crystallographic Symmetries (building)   D Deleting residues Detecting Secondary Structures Discarding molecule(s) Display Menu Distortions (identifying) Downlaoding Program General tutorial material Electron density maps tutorial material   E Electron Density Maps Navigating Changing the contouring sigma value Fitting (residues into). Energy Minimisation Energy (Threading)   F Feedback, Questions Files Fitting Molecules Fitting (Residues into electron density) Force Fields   G Gromos   H H-bonds Homology Modelling   I Identifying distorted parts of the protein Image Gallery   L Local Coordinates Labels Loading Protein Default appearance Loops (Building)   M Measuring Distances, Angles, Torsions Mean Force Potential (used during threading) Menus Files Select Build Tools Display Color Merging several files Modelling Proteins Moving a molecule independently of others Moving a subpart of the molecule only Moving the slab along the Z axis Mutations   P Phi/Psi (changing) Phi/Psi (viewing) Pov-Ray Preferences   R Ramachandran Plots Ray tracing References Rendering Quality (comparison) Renumbering Amino-acids Ribbon representations RMS deviation Rotate the molecule around a specific axis (X or Y or Z)   S Saving a structural alignment Saving an image Saving only a part of a file Secondary Structures Detecting Rendering Selecting Residues (general considerations) Select (menu) Slab Structural Alignments Superposing Proteins Symmetries (crystallographic) Symmetries (non-crystallographic)   T Threading Energy Tips & Tricks Tools (accessible from main window) Tools (menu) Torsions tools. Tutorial (basic manipulation) Tutorial (advanced examples)   V-Z Viewing only the interior of the protein (slab mode) World Coordinates