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gnSourceSpec Member List This is the complete list of members for gnSourceSpec, including all inherited members. Clear() [virtual] Clone() const [inline, virtual] CloneRange(const gnSeqI startI, const gnSeqI len) const [virtual] gnContigSpec::CloneRange(const uint32 startI, const uint32 len) const=0 [pure virtual] CropEnd(gnSeqI cropLen) [virtual] CropStart(gnSeqI cropLen) [virtual] GetLength() const [inline, virtual] GetName() const [inline, virtual] GetSource() const [inline, virtual] GetSourceContigIndex() const [inline, virtual] GetSourceLength() const [inline, virtual] GetSourceName() const [inline, virtual] GetStart() const [inline, virtual] gnBaseSpec() [inline] gnClone() [inline] gnContigSpec() [inline] gnSourceSpec() gnSourceSpec(gnBaseSource *m_pSource, const uint32 m_ContigIndex=ALL_CONTIGS, const gnSeqI start=0, const gnSeqI endI=GNSEQI_END, const boolean revComp=false) gnSourceSpec(const gnSourceSpec &s) IsCircular() const [inline, virtual] IsReverseComplement() const [inline, virtual] m_circular [protected] m_length [protected] m_name [protected] m_pSource [protected] m_reverseComplement [protected] m_SourceContigIndex [protected] m_sourceName [protected] m_start [protected] Read(const gnSeqI start, gnSeqC *buf, uint32 &bufLen) const [inline, protected, virtual] SeqRead(const gnSeqI start, gnSeqC *buf, uint32 &bufLen, const uint32 contigI) const [virtual] SetCircular(const boolean value) [inline, virtual] SetLength(const gnSeqI len) [inline, virtual] SetName(const string &name) [inline, virtual] SetReverseComplement(const boolean value) [virtual] SetSourceContigIndex(const uint32 contigI) [inline, virtual] SetSourceName(const string &sourceName) [inline, virtual] SetStart(const gnSeqI start) [inline, virtual] ~gnBaseSpec() [inline, virtual] ~gnClone() [inline, virtual] ~gnContigSpec() [inline, virtual] ~gnSourceSpec()