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gnFileSource Member List This is the complete list of members for gnFileSource, including all inherited members. Clone() const=0 [pure virtual] Close() [virtual] GetContigID(const string &name) const=0 [pure virtual] GetContigListLength() const=0 [pure virtual] GetContigName(const uint32 i) const=0 [pure virtual] GetContigSeqLength(const uint32 i) const=0 [pure virtual] GetFileContig(const uint32 contigI) const=0 [pure virtual] GetFilter() const [inline, virtual] GetOpenString() const [inline, virtual] GetSpec() const=0 [pure virtual] gnBaseSource() [inline] gnClone() [inline] gnFileSource() [inline] gnFileSource(const gnFileSource &gnfs) HasContig(const string &name) const=0 [pure virtual] m_ifstream [protected] m_newlineSize [protected] m_newlineType [protected] m_openString [protected] m_pFilter [protected] Open(string openString) [virtual] Open() [virtual] ParseStream(istream &fin)=0 [private, pure virtual] Read(const uint64 pos, char *buf, uint32 &bufLen) [virtual] SeqRead(const gnSeqI start, char *buf, uint32 &bufLen, const uint32 contigI=ALL_CONTIGS)=0 [pure virtual] SetFilter(gnFilter *filter) [inline, virtual] ~gnBaseSource() [inline, virtual] ~gnClone() [inline, virtual] ~gnFileSource() [inline, virtual]